PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA27G00186
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARF
Protein Properties Length: 925aa    MW: 102888 Da    PI: 6.3312
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA27G00186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23198299199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++ + +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  AA27G00186 198 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--RNEKNQLF 293
                 99***********************9*****97777664.9************************************************..5688889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  AA27G00186 294 LGIRRA 299
                 **9997 PP

2Auxin_resp111.39.5e-37324407183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+v+++Pras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  AA27G00186 324 AAHAAATNSCFTVFFHPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWSNSHWRSVK 407
                 79*******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.02E-48184327IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40191313IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-21197293No hitNo description
PROSITE profilePS5086312.337198300IPR003340B3 DNA binding domain
SMARTSM010192.3E-23198300IPR003340B3 DNA binding domain
PfamPF023624.0E-21198299IPR003340B3 DNA binding domain
PfamPF065073.8E-32324407IPR010525Auxin response factor
PROSITE profilePS5174518.934819903IPR000270PB1 domain
PfamPF023096.4E-5830904IPR033389AUX/IAA domain
SuperFamilySSF542775.1E-6835893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MEKDEFVLPE LKSYSCCSSW KKTWFLLSDM KLSTSGLGQQ GHEGFSSSLF VFIFSPFSLI  60
PIWTLVSSIV VQSYSPKFLH SCMFLTGEKC LNSELWHACA GPLVSLPSSG SRVVYFPQGH  120
SEQVAATTNK EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKE  180
TFVPIELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELIA  240
RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIRNEKN QLFLGIRRAT  300
RPQTIVPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFFHP RASPSEFVIP LSKYIKAVFH  360
TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDTVRWSN SHWRSVKDYD GLFRCNSSNN  420
EDDLDITGLG ERQPRVSLWE IEPLTTFPMY PSLFPLRLKR PWHAGPSSLN DGRGDLASGL  480
TWLRGGGGEQ GLLPLNYPSV GLFPWMQQRL DLSQLGPDQN QQYQAMLAAG LQNMGGGDPL  540
RQQFVQMQEP QHHYLQQSAG HNSDLLLQQQ QQASQQLLPR HLLQAQTQMM SEHHPQQSMR  600
QEVSNQPTGQ PQQPDHAYLN AYKMQNGHLQ QWQQSDMPSP SYMKPDFADS NNKFATTVSL  660
MQQNSASPGS GDGSNLLNFS ITGQSVTPEQ LTTEAWSPKH GHPASNSFSE PLSLPQVYAG  720
KSLALEPGNT NLNPQNSSLF GVDHDSGLFL PSTVPRFGSS GDADASSMSL TDSGFQNSLY  780
GCMQDTHELL HGAGQINPSA QTKNFVKVWV LGLFSIPLLC SSSVYKSGSV GRSLDISRFS  840
SYHELREELG KMFAIEGLLE DPLRSGWQLV FVDKENDILL LGDDPWESFV NNVWYIKILS  900
PEDVQQMGEH GEGSGGSFSQ NPTHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1488644246388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0421960.0AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450468.10.0PREDICTED: auxin response factor 8 isoform X2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLR0GF160.0R0GF16_9BRAS; Auxin response factor
STRINGfgenesh2_kg.7__3131__AT5G37020.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8